WP2 overview: Difference between revisions
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(Created page with '== Mission == WP2 is a work package to data production in FANTOM5. With collaboration with other WPs, * Receive samples from WP1. ** record sample annotation. * Technical trans…') |
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== Mission == |
== Mission == |
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WP2 is a work package to data production in FANTOM5. |
'''WP2 is a work package to data production in FANTOM5.''' |
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We aim to produce high quality data with |
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* Library construction |
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* Sequencing with NGS |
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* Data processing |
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* And those quality control. |
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With collaboration with other WPs, |
With collaboration with other WPs, |
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** record sample annotation. |
** record sample annotation. |
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* Technical transfer from WP3. |
* Technical transfer from WP3. |
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** We have been transferred following protocols. |
** We have been transferred following protocols. -> [[Protocols]] |
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** Those technical transfers are under controlling with [http://www.iso.org/iso/iso_9000_selection_and_use.htm ISO9001 (Quality Management System)]. |
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[[Protocols]] |
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* Transfer data to WP4. |
* Transfer data to WP4. |
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** Check data quality with WP4. |
** Check data quality with WP4. |
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=== Overview of WP2 Data Production === |
=== Overview of WP2 Data Production === |
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[[File:WP2_overview1.png]] |
[[File:WP2_overview1.png]] |
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== Members == |
== Members == |
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* Masayoshi Itho (from WP3) |
* Masayoshi Itho (from WP3) |
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* Hideya Kawaji (from WP4) - [[User:Kawaji]] |
* Hideya Kawaji (from WP4) - [[User:Kawaji]] |
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== Reference == |
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* Our facility of NGS (Next Generation Sequencer) |
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** 454 GS FLX Titanium: Roche (x3 machines) |
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** 454 GSJunior: Roche (x0 machine -> x1 machine is planned) |
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** Genome Analyzer IIx (GAIIx): Illumina (x5 machines -> x2 machines from April 2011.) |
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** HiSeq2000: Illumina (x0 machines-> x4 machines from April 2011.) |
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** SOLiD 3plus: Life Technologies (x2 machines -> Planned to upgrade to SOLiD4) |
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** HeliScope: Helicos (x4 machines (x2 machines working)) |
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* Overview for NGS |
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[[File:NGSspec.png]] |
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== Contact == |
== Contact == |
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Latest revision as of 16:34, 15 February 2011
Mission
WP2 is a work package to data production in FANTOM5. We aim to produce high quality data with
- Library construction
- Sequencing with NGS
- Data processing
- And those quality control.
With collaboration with other WPs,
- Receive samples from WP1.
- record sample annotation.
- Technical transfer from WP3.
- We have been transferred following protocols. -> Protocols
- Those technical transfers are under controlling with ISO9001 (Quality Management System).
- Transfer data to WP4.
- Check data quality with WP4.
Overview of WP2 Data Production
Members
- Jun Kawai (Leader)
- Shiro Fukuda (Secretariat) - User:sfukuda
- Thierry Sengstag (IT Coordination)
- Riichiro Manabe (Production management, Flow construction and operation)
- Naoko Suzuki (Production management)
- Sachiko Kato (RNA bank)
Data Prodcution; GeNAS members
- Shunji Yamamori (DDP)
- Hiroo Inaba (QAU)
- Yumiko Yamamoto (PLA)
- Fumi Hori (PCO)
- Tsugumi Kawashima (ANA1)
- Sayaka Sato (ANA1)
- Mizuho Sakai (ANA2)
- Shouhei Noma (ANA3)
Advisor from another WP
- Masayoshi Itho (from WP3)
- Hideya Kawaji (from WP4) - User:Kawaji
Reference
- Our facility of NGS (Next Generation Sequencer)
- 454 GS FLX Titanium: Roche (x3 machines)
- 454 GSJunior: Roche (x0 machine -> x1 machine is planned)
- Genome Analyzer IIx (GAIIx): Illumina (x5 machines -> x2 machines from April 2011.)
- HiSeq2000: Illumina (x0 machines-> x4 machines from April 2011.)
- SOLiD 3plus: Life Technologies (x2 machines -> Planned to upgrade to SOLiD4)
- HeliScope: Helicos (x4 machines (x2 machines working))
- Overview for NGS
Contact
fantom5-wp2@gsc.riken.jp
