User:Kawaji
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Hideya KAWAJI <kawaji@gsc.riken.jp>
Interests
- ncRNA, in particular, miRNA promoters
- TSS shape and tissue/cell specificity
- Unit of promoters / promoter annotation
Methods
Analysis
- hierarchical clustering of gene expression - Removal of invariant genes may have to be done before, but the results looks OK even now.
- tissue specificity index - Ordered coding gene list with tissue/sample specificity, as a candidate of biomarkers
- expression_normalization_method
Roles in F5
- Leader of WP4 (data control)
- A member of WP2 (data production)
- A member of WP3 (technology development)
- Working on Platform_evaluation_project
- A member of WP4 (data analysis)
Memo
- User:Kawaji/120126_data data to be loaded in databases, in addition to genome browsers
- User:Kawaji/120209_resource_browser_memo
- User:Kawaji/120216_biomart_memo
