Software, methods

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Tag clustering / peak calls

see Clustering_evaluation

Genome Browser

see the left section - ZENBU and UCSC RIKEN mirror

Expression

BioLayout http://www.biolayout.org/fantom5/
Pathway fingerprinting - see [fantom5:00982] http://compbio.sph.harvard.edu/hidelab/pathprint/Pathprint/Pathway_Fingerprint.html
SwitchEngine See October_meeting

Sample exploration

FONSE (the Fantom ONtology Sample Explorer) http://yuri.lbl.gov:8600/fonse/ - see [fantom5:00967] for username and password
resource_wiki https://fantom5-collaboration.gsc.riken.jp/resource_wiki/

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