File release

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Known issue

Issues that will be corrected in the next release

  • strange symbols in the sample name: CNhs11316
  • inconsistent sample name (t cell / T cell)
  • three libraries are in wrong categories (tissue / primary cells)

Issues that will be corrected at some stage

  • Incomplete 'study' SDRF : process after sequencing
    • file names will be added at some stage
    • sex (male/female/unknown) information used in the mapping will be added at some stage.
  • Genomic coordinates of HeliScopeCAGE reads sometimes strange (beyond chromosomal size)
    • BAM file (delve mapping file) and CTSS files will be updated at some stage. Note that It only affects tens of reads.
  • Long reads (>64bp) of HeliScoeCAGE are mapped wrongly. Note that most of such long reads are bad reads (CTAG repeats, a.k.a BAO)
  • '@PG' tags in the BAM files is not included for some libraries

UPDATE

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