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(Created page with '== Known issue == === Issues that will be corrected in the next release === * strange symbols in the sample name: CNhs11316 * inconsistent sample name (t cell / T cell) * three…') |
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* Genomic coordinates of HeliScopeCAGE reads sometimes strange (beyond chromosomal size) |
* Genomic coordinates of HeliScopeCAGE reads sometimes strange (beyond chromosomal size) |
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** BAM file (delve mapping file) and CTSS files will be updated at some stage. Note that It only affects tens of reads. |
** BAM file (delve mapping file) and CTSS files will be updated at some stage. Note that It only affects tens of reads. |
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* Long reads (>64bp) of HeliScoeCAGE are mapped wrongly. Note that most of such long reads are bad reads (CTAG repeats, a.k.a BAO) |
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* Genomic coordinates of long reads in HeliScopeCAGE reads sometimes are strange ( |
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* '@PG' tags in the BAM files is not included for some libraries |
* '@PG' tags in the BAM files is not included for some libraries |
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Revision as of 19:31, 8 February 2011
Known issue
Issues that will be corrected in the next release
- strange symbols in the sample name: CNhs11316
- inconsistent sample name (t cell / T cell)
- three libraries are in wrong categories (tissue / primary cells)
Issues that will be corrected at some stage
- Incomplete 'study' SDRF : process after sequencing
- file names will be added at some stage
- sex (male/female/unknown) information used in the mapping will be added at some stage.
- Genomic coordinates of HeliScopeCAGE reads sometimes strange (beyond chromosomal size)
- BAM file (delve mapping file) and CTSS files will be updated at some stage. Note that It only affects tens of reads.
- Long reads (>64bp) of HeliScoeCAGE are mapped wrongly. Note that most of such long reads are bad reads (CTAG repeats, a.k.a BAO)
- '@PG' tags in the BAM files is not included for some libraries
UPDATE
- https://fantom5-collaboration.gsc.riken.jp/files/data/shared/UPDATE_009 - recommended version for the Feb meeting
- https://fantom5-collaboration.gsc.riken.jp/files/data/shared/UPDATE_008
- https://fantom5-collaboration.gsc.riken.jp/files/data/shared/UPDATE_007
- https://fantom5-collaboration.gsc.riken.jp/files/data/shared/UPDATE_006
- https://fantom5-collaboration.gsc.riken.jp/files/data/shared/UPDATE_005
- https://fantom5-collaboration.gsc.riken.jp/files/data/shared/UPDATE_004
- https://fantom5-collaboration.gsc.riken.jp/files/data/shared/UPDATE_003
- https://fantom5-collaboration.gsc.riken.jp/files/data/shared/UPDATE_002
- https://fantom5-collaboration.gsc.riken.jp/files/data/shared/UPDATE_001
