User:Nbertin: Difference between revisions

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(Created page with 'Nicolas Bertin <nbetin@gsc.riken.jp> ---- <br> == Role in F5 == *[[Data Analysis and Integration#Annotation_of_promoter_.2F_.27gene.27_expression.C2.A0:_Nicolas|Data…')
 
 
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Nicolas Bertin &lt;nbetin@gsc.riken.jp&gt;
Nicolas Bertin &lt;nbertin@gsc.riken.jp&gt;


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**[[User:Nbertin/Transcript model derived annotation protocol|Transcript model derived annotation protocol]]<br>
**[[User:Nbertin/Transcript model derived annotation protocol|Transcript model derived annotation protocol]]<br>
**[[User:Nbertin/CAGEscan driven annotation protocol|CAGEscan driven annotation protocol]] <br>
**[[User:Nbertin/CAGEscan driven annotation protocol|CAGEscan driven annotation protocol]] <br>
**[[User:Nbertin/Transcript model derived annotation protocol#Promoter_.2F_.27gene.27_expression|Promoter_/ 'gene'_expression]]<br>
**[[User:Nbertin/Transcript model derived annotation protocol#Promoter_.2F_.27gene.27_expression|Promoter / 'gene' expression]]<br>
**[https://fantom5-collaboration.gsc.riken.jp/wiki/index.php/CAGE_Cluster_update#Cluster_annotations CAGE_Cluster_update Cluster_annotations]
*Specific biological questions / dataset
*Specific biological questions / dataset
**NH
**NH
**...
**...
*Papers
**[[Long noncoding RNA main paper]]
***[[Nbertin/Long noncoding RNA main paper | on going analysis]]
**[[Product Space]]
**[[NH cell]]
**[[host-virus]]
***[[rinderpest]]
***[[influenza]]


== WEBDAV ==
<br>
https://fantom5-collaboration.gsc.riken.jp/webdav/home/nbertin/


<br>
<pre>
As of June 2012
CAGE-Tag-Cluster-Annotation-Data.ClosestTSS.20120112_set.tar.gz 24-Jan-2012 19:04 204M
CAGE-Tag-Cluster-Annotation-Data.ClosestTSS/ 21-Dec-2011 22:23 -
CAGE-Tag-Cluster-Annotation_Apr11/ 27-Apr-2011 20:07 -
CAGE-Tag-Cluster-Annotation_Aug11/ 08-Aug-2011 17:12 -
CAGE-Tag-Cluster-Annotation_CAGEscanOrphanRescue_Dec11/ 21-Dec-2011 22:08 -
CAGE-Tag-Cluster-Annotation_Dec11/ 21-Dec-2011 22:16 -
CAGE-Tag-Cluster-Annotation_EncodeRegTfbsClustered/ 24-Apr-2012 16:57 -
CAGE-Tag-Cluster-Annotation_GeneOntology_Dec11/ 21-Dec-2011 22:03 -
CAGE-Tag-Cluster-Annotation_Jan12/ 28-May-2012 17:13 -
CAGE-Tag-Cluster-Normalization-Comparison_Dec11/ 12-Jan-2012 13:11 -
CAGE-Tag-Clustering-Evaluation/ 08-Jul-2011 12:58 -
CAGEscan-Data-UPDATE_July11/ 08-Jul-2011 17:11 -
CAGEscan-Mapping-Approach-Comparison/ 31-Jan-2012 23:47 -
CAGEscan-TransSplicing/ 13-Feb-2012 13:45 -
Catecholaminergic-Project/ 10-Jan-2012 17:25 -
F5-PWM-to-TranscriptionFactorGene/ 26-Jul-2011 15:53 -
F5-PWM-to-TranscriptionFactorGene_17May12/ 17-May-2012 16:56 -
F5-WP4-mRNA_EST-ProperlyOriented/ 18-Jan-2012 20:57 -
NHcell-Project/ 25-May-2012 20:44 -
Rapamycin-Project/ 04-Jul-2011 18:21 -
Sense-Antisense-Transcription/ 16-May-2011 22:43 -
lncRNAome-Construction_Feb12/ 16-Feb-2012 21:50 -
lncRNAome-Construction_Jan12/ 20-Jan-2012 21:55 -
lncRNAome-Construction_Mar12/ 21-Mar-2012 15:31 -
lncRNAome-RIKEN_flcDNA_Jan12/ 17-Jan-2012 20:25 -
lncRNAome-RNAseq_CufflinkAssembly-hCAGE-Associations_05Mar12/ 05-Mar-2012 14:05 -
lncRNAome-RNAseq_CufflinkAssembly-hCAGE-Associations_16Apr12/ 23-Apr-2012 21:16 -
lncRNAome-RNAseq_CufflinkTrinityAssembly-comparison_27Apr12/ 27-Apr-2012 10:59 -
lncRNAome-RNAseq_CufflinkTrinityAssembly-comparison_29May12/ 29-May-2012 22:20 -
lncRNAome_Aug11/ 11-Aug-2011 20:08 -
</pre>


== Interests ==
== Interests ==

Latest revision as of 16:01, 21 June 2012

Nicolas Bertin <nbertin@gsc.riken.jp>


Role in F5

WEBDAV

https://fantom5-collaboration.gsc.riken.jp/webdav/home/nbertin/ 

As of June 2012
	CAGE-Tag-Cluster-Annotation-Data.ClosestTSS.20120112_set.tar.gz	24-Jan-2012 19:04	204M
	CAGE-Tag-Cluster-Annotation-Data.ClosestTSS/	21-Dec-2011 22:23	 -
	CAGE-Tag-Cluster-Annotation_Apr11/	27-Apr-2011 20:07	 -
	CAGE-Tag-Cluster-Annotation_Aug11/	08-Aug-2011 17:12	 -
	CAGE-Tag-Cluster-Annotation_CAGEscanOrphanRescue_Dec11/	21-Dec-2011 22:08	 -
	CAGE-Tag-Cluster-Annotation_Dec11/	21-Dec-2011 22:16	 -
	CAGE-Tag-Cluster-Annotation_EncodeRegTfbsClustered/	24-Apr-2012 16:57	 -
	CAGE-Tag-Cluster-Annotation_GeneOntology_Dec11/	21-Dec-2011 22:03	 -
	CAGE-Tag-Cluster-Annotation_Jan12/	28-May-2012 17:13	 -
	CAGE-Tag-Cluster-Normalization-Comparison_Dec11/	12-Jan-2012 13:11	 -
	CAGE-Tag-Clustering-Evaluation/	08-Jul-2011 12:58	 -
	CAGEscan-Data-UPDATE_July11/	08-Jul-2011 17:11	 -
	CAGEscan-Mapping-Approach-Comparison/	31-Jan-2012 23:47	 -
	CAGEscan-TransSplicing/	13-Feb-2012 13:45	 -
	Catecholaminergic-Project/	10-Jan-2012 17:25	 -
	F5-PWM-to-TranscriptionFactorGene/	26-Jul-2011 15:53	 -
	F5-PWM-to-TranscriptionFactorGene_17May12/	17-May-2012 16:56	 -
	F5-WP4-mRNA_EST-ProperlyOriented/	18-Jan-2012 20:57	 -
	NHcell-Project/	25-May-2012 20:44	 -
	Rapamycin-Project/	04-Jul-2011 18:21	 -
	Sense-Antisense-Transcription/	16-May-2011 22:43	 -
	lncRNAome-Construction_Feb12/	16-Feb-2012 21:50	 -
	lncRNAome-Construction_Jan12/	20-Jan-2012 21:55	 -
	lncRNAome-Construction_Mar12/	21-Mar-2012 15:31	 -
	lncRNAome-RIKEN_flcDNA_Jan12/	17-Jan-2012 20:25	 -
	lncRNAome-RNAseq_CufflinkAssembly-hCAGE-Associations_05Mar12/	05-Mar-2012 14:05	 -
	lncRNAome-RNAseq_CufflinkAssembly-hCAGE-Associations_16Apr12/	23-Apr-2012 21:16	 -
	lncRNAome-RNAseq_CufflinkTrinityAssembly-comparison_27Apr12/	27-Apr-2012 10:59	 -
	lncRNAome-RNAseq_CufflinkTrinityAssembly-comparison_29May12/	29-May-2012 22:20	 -
        lncRNAome_Aug11/	11-Aug-2011 20:08	 -

Interests

<edit>

  • ncRNA
  • CAGEscan / CAGE integration
  • ...


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