Software, methods: Difference between revisions
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Trying to list software/methods/database systems provided to FANTOM5. Feel free to add anything |
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== Read alignment with genome == |
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* Delve - contact: Timo Lassmann |
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== Tag clustering / peak calls == |
== Tag clustering / peak calls == |
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* see [[Clustering_evaluation]] |
* see [[Clustering_evaluation]] |
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* see the left section (side bar) - ZENBU and UCSC RIKEN mirror |
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== Expression == |
== Expression == |
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* Pathway fingerprinting - see [fantom5:00982] http://compbio.sph.harvard.edu/hidelab/pathprint/Pathprint/Pathway_Fingerprint.html |
* Pathway fingerprinting - see [fantom5:00982] http://compbio.sph.harvard.edu/hidelab/pathprint/Pathprint/Pathway_Fingerprint.html |
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* SwitchEngine See [[October_meeting]] |
* SwitchEngine See [[October_meeting]] |
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== Sample exploration == |
== Sample exploration == |
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Latest revision as of 16:37, 18 October 2011
Trying to list software/methods/database systems provided to FANTOM5. Feel free to add anything
Read alignment with genome
- Delve - contact: Timo Lassmann
Tag clustering / peak calls
Genome Browser
- see the left section (side bar) - ZENBU and UCSC RIKEN mirror
Expression
- BioLayout http://www.biolayout.org/fantom5/
- Pathway fingerprinting - see [fantom5:00982] http://compbio.sph.harvard.edu/hidelab/pathprint/Pathprint/Pathway_Fingerprint.html
- SwitchEngine See October_meeting
Sample exploration
- FONSE (the Fantom ONtology Sample Explorer) http://yuri.lbl.gov:8600/fonse/ - see [fantom5:00967] for username and password
- resource_wiki https://fantom5-collaboration.gsc.riken.jp/resource_wiki/
