User contributions for Plessy
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5 April 2017
- 14:4114:41, 5 April 2017 diff hist +143 CAGEscan Link to ZENBU. current
28 March 2017
- 14:1814:18, 28 March 2017 diff hist +243 CAGEscan Link to OP-WORKFLOW-CAGEscan-FANTOM5-v1.0.
- 12:4912:49, 28 March 2017 diff hist 0 m CAGEscan Correct typo.
- 12:4912:49, 28 March 2017 diff hist +3,692 CAGEscan Transfer data back from the FGTT wiki.
26 December 2016
- 09:4109:41, 26 December 2016 diff hist −24 CAGEscan mapping protocol Updated the CAGEscan pipeline. current
22 February 2015
- 17:0817:08, 22 February 2015 diff hist +3 m CAGEscan Added missing file suffix.
- 17:0817:08, 22 February 2015 diff hist +54 CAGEscan Added link to schedule 2012
20 February 2015
- 17:1217:12, 20 February 2015 diff hist +93 CAGEscan Add a section for the data descriptor.
- 15:3915:39, 20 February 2015 diff hist +461 CAGEscan Added fresh links.
- 15:3215:32, 20 February 2015 diff hist −672 CAGEscan Shortened introduction.
15 October 2014
- 17:2217:22, 15 October 2014 diff hist +63 ZENBU wishlist One more item to the list. current
8 October 2014
- 13:5313:53, 8 October 2014 diff hist +180 User:Plessy/Richness Mention tutorial on GitHub. current
10 October 2013
- 11:3511:35, 10 October 2013 diff hist +79 ZENBU wishlist Zenbu wish of the day.
24 August 2013
- 18:5818:58, 24 August 2013 diff hist +1,017 Olfactory receptors Replace library names by contents, plot current
- 18:0318:03, 24 August 2013 diff hist +12 m Olfactory receptors Correct class.
- 17:5617:56, 24 August 2013 diff hist +317 Olfactory receptors Load and reshape the data in R.
- 17:3817:38, 24 August 2013 diff hist +10 m Olfactory receptors Rename output page.
- 17:3617:36, 24 August 2013 diff hist +706 Olfactory receptors Expression atlas of mouse olfactory receptors: Generate a table in "long" format.
29 July 2013
- 16:4016:40, 29 July 2013 diff hist +101 ZENBU wishlist One more Zenbu wish.
28 March 2013
- 09:2109:21, 28 March 2013 diff hist +21 CAGEscan BED12 formatted CAGEscan clusters available since 2011.
27 March 2013
- 20:4320:43, 27 March 2013 diff hist −58 User:Plessy/Richness Version with flexible tresholding
- 19:1219:12, 27 March 2013 diff hist +176 m User:Plessy/Richness Saved file.
- 19:0419:04, 27 March 2013 diff hist +64 User:Plessy/Richness Factor code again.
- 18:4618:46, 27 March 2013 diff hist +10 m User:Plessy/Richness Factor code.
- 18:2818:28, 27 March 2013 diff hist +327 User:Plessy/Richness Subsampling using the first quartile (2,514,503) as treshold (currently being tested)
23 March 2013
- 19:2819:28, 23 March 2013 diff hist −722 User:Plessy/Richness →Analysis
- 19:2819:28, 23 March 2013 diff hist +1,253 User:Plessy/Richness Potential shortcomings.
- 19:2019:20, 23 March 2013 diff hist +25 m User:Plessy/Richness Minor correction made by Al in December.
- 19:0719:07, 23 March 2013 diff hist 0 File:Richness DBscan-sample-coexpr-clusters histogram.png uploaded a new version of "File:Richness DBscan-sample-coexpr-clusters histogram.png": Added abline. current
- 19:0619:06, 23 March 2013 diff hist 0 N File:Richness DBscan-sample-coexpr-clusters histogram.png No edit summary
- 18:3918:39, 23 March 2013 diff hist −2,031 User:Plessy/Richness Work on rarefied libraries from start.
- 18:0818:08, 23 March 2013 diff hist +2,499 User:Plessy/Richness →Merge similar libraries
- 17:4517:45, 23 March 2013 diff hist +167 m User:Plessy/Richness Note that the starting data is a subset of FREEZE_PHASE1.
- 17:3817:38, 23 March 2013 diff hist −753 m User:Plessy/Richness Removed duplicated section.
- 17:3617:36, 23 March 2013 diff hist +141 m User:Plessy/Richness Path to the repository in OSC's intranet.
- 17:3117:31, 23 March 2013 diff hist +37 m User:Plessy/Richness colClasses
- 17:0117:01, 23 March 2013 diff hist −12 User:Plessy/Richness Replace "Kenny's" clusters by "DBscan" clusters made by Timo.
- 16:3916:39, 23 March 2013 diff hist −38 m User:Plessy Removed confusing comment. current
19 February 2013
- 21:4221:42, 19 February 2013 diff hist +470 User:Plessy Normalisation factors for FREEZE_PHASE2.
14 February 2013
- 13:3613:36, 14 February 2013 diff hist +2 m User:Plessy Versionned link.
- 13:3513:35, 14 February 2013 diff hist +72 m User:Plessy Noted the message number of the announcement.
13 February 2013
- 16:3816:38, 13 February 2013 diff hist +1,069 User:Plessy Quality controls.
11 February 2013
- 14:5814:58, 11 February 2013 diff hist +279 User:Plessy Construct library lists from CNhs_lib or $MOUSE/HUMAN_hCAGE_LIBS.
- 14:4914:49, 11 February 2013 diff hist +762 User:Plessy List of directories for FREEZE_PHASE2.
- 14:1014:10, 11 February 2013 diff hist +87 User:Plessy Added public link for FREEZE1.1
24 January 2013
- 18:2918:29, 24 January 2013 diff hist −269 User:Plessy Sort also by strand (thanks Dave !).
- 18:1418:14, 24 January 2013 diff hist −113 User:Plessy Sort also by strand (thanks Dave !).
19 January 2013
- 15:0115:01, 19 January 2013 diff hist +1 User:Plessy Sort the chromosomes in alphanumeric order (for BEDTools).
15 January 2013
- 16:2416:24, 15 January 2013 diff hist +99 User:Plessy Added FREEZE_PHASE2 files.
11 January 2013
- 19:0519:05, 11 January 2013 diff hist +4 User:Plessy Updated to FREEZE_PHASE1.1
