News archives

• ZENBU is upgraded into 2.0 [16th Feb, 2011]
• UCSC Genome Browser has been updated, where FANTOM5 category appears in the track selection part. [16th Feb, 2011]
• The repeat masker track in UCSC Local Mirror hg19 has been corrected. [14th Feb, 2011]
• UPDATE_010 is available. Note that recommended data set for the Feb meeting is still UPDATE_009 for aligning our analysis. [Feb 10th, 2011]
• Martin Frith provided Paraclu clustering of CAGE reads [Feb 8th, 2011]
• We listed several known issues about the released files in File_release [Feb 8th, 2011]
• We noticed that the repeat masker track in UCSC Local Mirror hg19 has been broken (including table browser), and we are fixing now. Don't use it until it is fixed. [2nd Feb, 2011]
• UPDATE_009 is visible from UCSC Local Mirror [Feb 2nd, 2011]
• gene expression table on the UPDATE_009 is available [Feb 1st, 2011]
• Data files are updated UPDATE_009, which is a recommended data set for the meeting in Feb [Feb 1st, 2011]
• New gene expression table is provided, due to the problem in the calculation of the library sizes. obsoleted data is still accessible [20th Jan, 2011]
• gene expression table had a wrong calculation of the library sizes, and all of them has been moved into obsolete directory. We are now in the process of this correction [19th Jan, 2011]
• Abstract submission for the First FANTOM5 meeting in February is announced [13th Jan, 2011]
• UPDATE_008 data has been put on UCSC Local Mirror [6th Jan, 2011]
• Data files are updated UPDATE_008. [5th Jan, 2011]
• Dataset_introduction page is added [4th Jan, 2011]
• CTSS expression based on delve mapping is now available!!!. [14th Dec 2010]
• Data based on indexDP mapping is no longer available. Only delve_align based mapping data is in the system.
• Data files are updated as UPDATE_007.
• Data files are updated as UPDATE_006, where the issue in UPDATE_005 is solved. Be aware of hg18 or hg19, as a part of the file names. [18th Nov, 2010]
• !Warning! several files are misleading (mapped on hg19 but named as hg18) in UPDATE_005. See details [16th Nov, 2010]
• Data files are updated UPDATE_005. [16th Nov, 2010]
• New FANTOM5 logo! [15th Nov, 2010]
• Hierarchical clustering on gene expression and sample specificity index are provided [10th Nov, 2010]
• Data files are updated UPDATE_004, which includes delve-based mapping in 'f5pipeline' directory. [9th Nov, 2010]]
• A table of gene expressions on the data of UPDATE_003 is contributed here [8th Nov, 2010]
• Data files are updated. The change is just removal of a part of files, to avoid confusion. No addition and no changes to existing files. - see UPDATE_003 [29th Oct, 2010]
• Data files are updated - see UPDATE_002 [28th Oct, 2010]
• project overview is added [19th Oct, 2010]