Liver regeneration
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Zenbu configurations and status
Gene expression profiles
- Known gene expression for the liver regeneration series
- TPM
- tagcount
- Promoterome v1.0 expression for the liver regeneration series
- Top dynamic TFs in the liver regeneration series
- Freeze1 cluster based RLE normalized expression
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/mouse_liver-regeneration.hCAGE.mm9.RLE.tpm.cluster.txt.gz
- Cluster to gene association https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/mouse_robust_cluster2entrez.txt
Motifs
- Top dynamic motifs in the liver regeneration series
MARA based network results
- Most recent version (July 23 2012):
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_liver-regeneration/mouse_liver-regeneration.mara
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_liver-regeneration/mouse_liver-regeneration.net.tf_gene.csv
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_liver-regeneration/mouse_liver-regeneration.net.tf_prom.csv
Related samples
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References
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Quality control
- Most recent version (July 23 2012):
ISMARA analysis results
Hepatocytes
All samples: http://ismara.unibas.ch/timecourses/liverregenHepatocytes/ismara_report/
Replicate averaged: http://ismara.unibas.ch/timecourses/hepat-avgd/averaged_report/index.html
Hepatic stellate cells
All samples: http://ismara.unibas.ch/timecourses/liverregenStellate/ismara_report/
Replicate averaged: http://ismara.unibas.ch/timecourses/stella-avgd/averaged_report/index.html
Liver sinusoidal epithelial cells
All samples: http://ismara.unibas.ch/timecourses/liverregenSinusoidal/ismara_report/
Replicate averaged: http://ismara.unibas.ch/timecourses/sinus-avgd/averaged_report/index.html
For more information, see ISMARA.
