FANTOM5 short RNA analysis
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Short RNA main paper plan
This draft plan will be continuously updated based on ongoing the discussions.
FANTOM5 short RNA resources for the main paper
See this directory on the webdav
Note that this file contains raw counts; any fractional counts are due to tags mapping to multiple locations on the genome. To normalize these data, divide each column by its sum, and multiply by 1,000,000 to obtain counts-per-million-microRNAs [cpm].
- MicroRNA target predictions from the EIMMo database
- MicroRNA target predictions from the TargetScan database
- MicroRNA promoter predictions
Short RNA Analysis Teleconference
May 9th -- FANTOM5 short RNA analysis [Michiel de Hoon] Presentation file
Overview of the short RNA data in FANTOM5
| Organism | Type | Number of samples |
|---|---|---|
| Human | Primary cells | 287 |
| Tissues | 6 | |
| Time course | 87 | |
| Nuclear fraction | 5 | |
| Mouse | Primary cells | 1 |
| Time course | 27 | |
| Quality control | 14 | |
| Rat | Primary cells | 3 |
| Tissues | 3 | |
| Dog | Primary cells | 3 |
| Tissues | 3 | |
| Chicken | Primary cells | 3 |
| Tissues | 2 | |
| Total | 444 | |
