Visual cortex development

Visual cortex development

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Zenbu configurations and status

• Visual cortex(COMPLETED ...)

Gene expression profiles

• Known gene expression for the visual cortex development series (RefSeq based promoters)
  • TPM
  • tagcount
• Promoterome v1.0 expression for the visual cortex development series
• Top dynamic TFs in visual cortex development series
• Freeze1 cluster based RLE normalized expression
  • https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/mouse_visual_cortex.hCAGE.mm9.RLE.tpm.cluster.txt.gz
  • Cluster to gene association https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/mouse_robut_cluster2entrez.txt

Motifs

• Top dynamic motifs in visual cortex development series

MARA based network results

• Most recent version (July 23 2012):
  • https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_visual_cortex/mouse_visual_cortex.mara
  • https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_visual_cortex/mouse_visual_cortex.net.tf_gene.csv
  • https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_visual_cortex/mouse_visual_cortex.net.tf_prom.csv

• Previous version(s):
  • https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120409/mouse_visual_cortex/mouse_visual_cortex.mara

Related samples

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References

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Quality control

• Most recent version (July 23 2012):
  • https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_visual_cortex/

• Previous version(s):
  • https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120409/mouse_visual_cortex/

ISMARA results

All samples: http://ismara.unibas.ch/timecourses/visualcortex/ismara_report/