Data Analysis and Integration

Please edit this section to fit to the needs of Data Analysis and Integration.

General topics

Mapping and QC: Timo

• A selction of mapping tools has been added to the pipelines. I wrote a simple shell script to annotate / QC libraries.

Clustering / peak calling: Erik

• Text

Expression normalization and differential expression (based on genes, peaks, or whatever) : Kawaji

• computational performance of edgeR 1.6 (by Marina)

Annotation of promoter / 'gene' expression : Nicolas

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Motif activity : Michiel

• Template:Attach anchor(motif activity analysis.pptx)

Conservation / orthologous mapping (variome, basins) : Max

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Main paper specific analysis

• Tissue specificity / cell type specificity - ontology consious
• Annotation of transcript (ncRNA)