Ciliated epithelium timecourse

Mouse primary lunge epithelial cell differentiation to ciliated epithelial cells

Mitsuru Morimoto ...

Zenbu configurations and status

• Ciliated epithelium differentiation

Gene expression profiles

• Known gene expression for the Ciliated epithelium differentiation series
  • TPM
  • tag count
• Promoterome v1.0 expression for the Ciliated epithelium differentiation series
• Top dynamic TFs in the Ciliated epithelium differentiation series
• Freeze1 cluster based RLE normalized expression
  • https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/mouse_Tracheal_epithelial_cells.hCAGE.mm9.RLE.tpm.cluster.txt.gz
  • Cluster to gene association https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/mouse_robust_cluster2entrez.txt

Motifs

• Top dynamic motifs in the Ciliated epithelium differentiation series

MARA based network results

• Most recent version (July 23 2012):
  • https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_Tracheal_epithelial_cells/mouse_Tracheal_epithelial_cells.mara
  • https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_Tracheal_epithelial_cells/mouse_Tracheal_epithelial_cells.net.tf_gene.csv
  • https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_Tracheal_epithelial_cells/mouse_Tracheal_epithelial_cells.net.tf_prom.csv

• Previous version(s):
  • https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120409/mouse_Tracheal_epithelial_cells/mouse_Tracheal_epithelial_cells.mara

Related samples

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References

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Quality control

Most recent version (July 23 2012):

https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_Tracheal_epithelial_cells/

Previous version(s):

https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120409/mouse_Tracheal_epithelial_cells/

File:Tracheal epithelial cells.zip

• ..

ISMARA analysis results

All samples: http://ismara.unibas.ch/timecourses/Ciliatedepdiff/ismara_report/

Replicate averaged: http://ismara.unibas.ch/timecourses/ciliated-avgd/averaged_report/index.html

For more information, see ISMARA.