User:Tlassmann/clustering

Purpose

Provide basic F3 style clustering.

Method

For each library, Helicos CAGE tag mappings with Delve quality of at least 10 were clustered into CTSS:s. Expression was calculated as tags per million (TPM) and CTSS:s with at least 1 TPM expression were clustered using single linkage clustering (separate on each strand) of tags spaced at most 20 bp.

Input

Delve mapping files in bam format.

Output

Cluster file in BED format.