Time-courses analysis call

Weekly telephone calls open to all collaborators are held every Thursday 17:00 -18:00 JST. In case of Japanese holidays or special events, no call will be held. In such cases, information will be sent out to the FANTOM5 mailing list.

The agenda is decided by the FANTOM5 Management group at RIKEN. Suggestions can be sent to Carsten Daub. Agenda will be announced to the FANTOM5 mailing list every Monday. Agenda and presentation materials will be available on this page before each meeting.

The meetings will be recorded and saved here for later reference.

Phone numbers:

From outside of Japan: +81-3-4333-4000

From anywhere in Japan: 050-3786-6666 (in Japanese) or 0570-03-4444 (in English)

From the Tokyo Area: 03-4333-4444 (in Japanese) or 03-4333-4000 (in English)

From the Osaka Area: 06-7637-2222

You will be asked to enter conference ID followed by # and guest password followed by # to join the conference. Please find them below:

Conference id: 24711

Guest password: 3502

You will also be asked to state your name and press the # key.

TIPS ON USAGE:

We recommend putting your line in "listen-only" mode during presentation sessions of the call to avoid noise and other interferences.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Call In Instructions for guest users (English)

Call In Instructions for guest users (Japanese)

Tentative plan for upcoming presentations

• April 03 CANCELLED
• April 10 CANCELLED, FANTOM5 short RNA telecon will be held instead
• April 17 Time-course update

FANTOM5 Analysis Call cancelled until further notice

You will be notified about the next call through the FANTOM5 mailing list.

This week's teleconference is cancelled.

May 22nd CANCELLED

This week's teleconference is cancelled.

May 15th CANCELLED

This week's teleconference is cancelled.

May 8th CANCELLED

This week's teleconference is cancelled.

May 1st CANCELLED

This week's teleconference is cancelled.

April 24th CANCELLED

This week's teleconference is cancelled.

April 17th

AGENDA

1. Update on Time-course paper File:Time course paper figs and punchlines Apr 17 2014.pdf

2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on April 17th (uploaded after the call): File:140417 F5 Time-course telecon.zip

April 10th CANCELLED

This week's teleconference is cancelled. short RNA & lncRNA telecom will be held instead.

April 03rd CANCELLED

This week's teleconference is cancelled.

March 27th CANCELLED

This week's teleconference is cancelled.

March 20th

Chair: Carsten Daub

AGENDA

1. Update on Time-course paper File:Time-course data paper outline 2014-03-20.pdf

2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on March 20th (uploaded after the call): File:140320 F5 Time-course telecon.zip

March 13th CANCELLED

This week's teleconference is cancelled.

March 6th CANCELLED

This week's teleconference is cancelled.

February 27th CANCELLED

This week's teleconference is cancelled.

February 20th CANCELLED

This week's teleconference is cancelled.

February 13th

Chair: Carsten Daub

AGENDA

1. Manual Classification of Early Enhancer, Promoter and Transcription Factor Response Dynamics by Kristoffer Vitting-Seerup (Albin Sandelin Group) File:Manual grouping of response dynamics Vitting Seerup.pdf
2. Update Time-course paper File:Time-course data paper outline 10 feb.pdf

3. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on February 6th (uploaded after the call): File:140213 F5 Time-course telecon.zip

February 6th

Chair: Carsten Daub

AGENDA

1. Loss of protein domains in time courses by Lilje Berit (Albin Sandelin Group)File:Protein domain loss TC.pdf

2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on February 6th (uploaded after the call): File:140206 F5 Time-course telecon.zip

January 30 CANCELLED

Cancel due to DGT Retreat.

January 23

Chair: Carsten Daub

AGENDA

1. Novel enhancer clusters and suggestions for validation strategies by Albin Sandelin group File:Enhancer clusters summary 2014-01-23.pdf

2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on January 23rd (uploaded after the call): File:140123 F5 Time-course telecon.zip

January 16

Chair: Carsten Daub

AGENDA

1. Update on validation experiment planning File:Timecourse telecon 2013-01-16.pdf

2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on January 16th (uploaded after the call): File:140116 F5 Time-course telecon.zip

January 9

Chair: Carsten Daub

AGENDA

1. FANTOM5 phase2 known motif collections: overview and clustering results by Vsevolod Makeev File:F5 Jan9 e VIGG.pdf

2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on January 9th (uploaded after the call): File:140109 F5 Time-course telecon.zip

December 25th & January 2nd CANCELLED

The telcon is cancelled over the holiday season.

December 19th

Chair: Carsten Daub

AGENDA

1. Validation target identification for time-course main paper by Erik, Albin, Carsten File:Validation targets 2013-12-19.pdf

2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on December 19th (uploaded after the call): File:131219 F5 Time-course telecon.zip

December 12th

Chair: Carsten Daub

AGENDA

1. Time-courses main paper update by Erik, Albin, Carsten File:Time-course paper outline 2013-12-12.pdf

• Link to webdav with paper draft https://fantom5-collaboration.gsc.riken.jp/webdav/time-courses_draft/

2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on December 12th (uploaded after the call): File:131212 F5 Time-course telecon.zip

December 5th CANCELLED

This week's teleconference is cancelled.

November 28th

Chair: Carsten Daub

AGENDA

1. Primary lymphatic endothelial cells response to vascular endothelial growth factor C (VEGF-C) by Michael Detmar group File:Fantom5 Detmar Nov28 2013B.pdf

2. Time-course Wiki page status File:Timecourse Wiki status 2013-11-28.pdf

3. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on November 28th (uploaded after the call): File:131128 F5 Time-course telecon.zip

November 21th CANCELLED

This week's teleconference is cancelled.

November 14th

Chair: Carsten Daub

AGENDA

1. Analysis of MCF-7 Time Course Data Using Gene Expression Trajectories by Jess Mar
File:Riken f5 confcall 14november2013 jess.pdf
2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on November 14th (uploaded after the call): File:131114 F5 Time-course telecon.zip

November 7th

Chair: Carsten Daub

AGENDA

1. Time-courses main paper update by Erik and Carsten File:EarlyResponse 20131107.pdf File:MDS diff expr enhancers start end copy.pdf File:MDS diff expr promoters start end.pdf File:MDS diff expr TF start end.pdf
2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on November 7th (uploaded after the call): File:131107 F5 Time-course telecon.zip

October 31st

Chair: Carsten Daub

AGENDA

1. Time-courses main paper update by Erik and Carsten File:Main paper update 2013-10-31 Erik Carsten.pdf
2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on October 31st (uploaded after the call): File:131031 F5 Time-course telecon.zip

October 24th

Chair: Carsten Daub

AGENDA

1. FANTOM5 time course dynamics and divergences by Robin Andersson & Morana Vitezic (Albin's group) File:FANTOM5 time course divergence.pdf
2. Time-course main paper brief update File:Main paper update 2013-10-24 Erik Carsten.pdf
3. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on October 24th (uploaded after the call): File:131024 F5 Time-course telecon.zip

October 17th

Chair: Carsten Daub

AGENDA

1. Time-courses main paper update by Erik and Carsten File:Main paper update 2013-10-17 Erik Carsten.pptx File:Dynamically expressed promoters.pdf
2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on October 17th (uploaded after the call): File:131017 F5 Time-course telecon.zip

October 10th

Chair: Carsten Daub

AGENDA

1. Time-courses main paper update by Erik and Carsten File:Main paper update 2013-10-10 Erik Carsten.pdf
2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on October 10th (uploaded after the call): File:131010 F5 Time-course telecon.zip

October 3rd CANCELLED

This week's teleconference is cancelled.

September 26th

Chair: Carsten Daub

AGENDA

1. "Global overview of Early Response Genes (ERG) in the FANTOM5 Time Courses" by Olga Hrydziuszko File:Telecon 20130926 OH.pdf
2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on September 26th (uploaded after the call): File:130926 F5 Time-course telecon.zip

September 19th

Chair: Carsten Daub

AGENDA

1. "Relationship between enhancer and promoter dynamics in time courses" by Erik Arner File:Telecon 20130919 EA short.pdf
2. Other topics, if any

Audio File The audio file from the call on September 19th (uploaded after the call): File:130919 F5 Time-course telecon.zip

September 12th CANCELLED

This week's teleconference is cancelled.

September 5th CANCELLED

FANTOM5 Short RNA will be held instead. https://fantom5-collaboration.gsc.riken.jp/wiki/index.php/FANTOM5_analysis_call#September_5th_--_FANTOM5_short_RNA_.26_lncRNA_Analysis_Call

August 29th

Chair: Carsten Daub

AGENDA

1. "Systematic identification of transcriptional regulators controlling lipid handling in human adipocytes" by Niklas Mehjert, Hui Gao, Peter Arner File:F5 TC 130829.pdf
2. Other topics, if any

Audio File The audio file from the call on August 29th (uploaded after the call): File:130829 F5 Time-course telecon.zip

August 22nd

Chair: Carsten Daub

AGENDA

1. "FANTOM5 Cerebellum Development Time Course Satellite Paper Update" by Thomas Ha & Dan Goldowitz File:Presentation 20130822.pdf
2. Other topics, if any

Audio File The audio file from the call on August 22nd (uploaded after the call): File:130822 F5 Time-course telecon.zip

August 15th CANCELLED

This week's teleconference is cancelled.

August 8th

Chair: Carsten Daub

AGENDA

1. "Network-based identification of dynamic regulatory patterns by combined promoter expression clustering and motif enrichment analysis" by Cesare Furlanello & Marco Mina File:Fbk F5tc 2013.08.08 v2.pdf
2. Other topics, if any

Audio File The audio file from the call on August 8th (uploaded after the call): File:130808 F5 Time-course telecon.zip

August 1st

Chair: Carsten Daub

AGENDA

1. "Update and discussion around Figure 4: Early response across time-courses", Olga Hrydziuszko & Carsten File:Fig4 update 20130731b.pdf
2. Other topics, if any

Audio File The audio file from the call on August 1st (uploaded after the call): File:130801 F5 Time-course telecon.zip

July 25th CANCELLED

This week's teleconference is cancelled.

July 18th CANCELLED

This week's teleconference is cancelled.

July 11th CANCELLED

This week's teleconference is cancelled.

July 4th CANCELLED

This week's teleconference is cancelled due to CLST Retreat.

June 27th

Chair: Carsten Daub

AGENDA

1. Presentation by Yulia Medvedeva (KAUST) "Epigenetic modifications and TFBS in promoters of immediately early response genes in MCF7" File:Epigenetics&TFBS.pdf; File:Epigenetics&TFBS Summary 18.06.13.doc
2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on June 27th (uploaded after the call): File:130627 F5 Time-course telecon.zip

June 20th

Chair: Carsten Daub

AGENDA

1. "Update time-course main paper status" by Erik & Carsten File:TC main paper update 2013-06-20.pdf
2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on June 20th (uploaded after the call): File:130620 F5 Time-course telecon.zip

June 13th

Cancelled

June 6th

Chair: Carsten Daub

AGENDA

1. Presentation Owen Rackham "Analysing time course networks: Modules and motifs" Google doc of presentation File:TC telecon.pdf
2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on June 6th (uploaded after the call): File:130606 F5 Time-course telecon.zip

May 30th

Cancelled

FANTOM5 short RNA & lncRNA Analysis Call will be held instead. Web page here.

May 23rd

Chair: Carsten Daub

AGENDA

1. Presentation by Erik Arner; "Motif activity (MARA) on Enhancers" File:Telecon 20130523 enhancers.pdf

2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on May 23rd (uploaded after the call): File:130523 F5 Time-course telecon.zip

May 16th

Chair: Carsten Daub

AGENDA

1. Presentation by Liam Fearnley (University of Queensland, AIBN) "Exploring the effects of the IER on signal transduction - progress and preliminary results" File:Effects of IER on Signal Transduction.pdf

File:130516TC Call-IER-ST Supplement.zip

2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on May 16th (uploaded after the call): File:130516 F5 Time-course telecon.zip

May 9th

Cancelled

RNA Analysis Call will be held instead.

For details check the telecon wiki page here.

May 2nd

Chair: Carsten Daub

AGENDA

1. Time course main paper update - Erik Arner & Carsten Daub File:Time-courses update 2013-05-02.pdf

2. Early transcription factor ChIP-seq, initial results - Alistair Forrest File:Preliminary IER ChIP seq.ppt

3. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on May 2nd (uploaded after the call): File:130502 F5 Time-course telecon.zip

April 25th

Chair: Carsten Daub

AGENDA

1. Presentation by Stuart Aitken and Colin Semple (University of Edinburgh) "Defining the immediate early response using kinetic signatures: a novel approach to FANTOM 5 Cage timecourse data" File:Aitken semple F5 timecourse talk April 2013.pdf

2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on April 25th (uploaded after the call): File:130425 F5 Time-course telecon.zip

April 18th

Chair: Carsten Daub

AGENDA

1. Presentation by Christine Wells "Genomic regulatory determinants of pluripotency" File:Pluripotency basin final.pdf

2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on April 18th (uploaded after the call): File:130418-1 F5 Time-course telecon.zip

April 11th

Chair: Carsten Daub

AGENDA

1. "SMC timecourses: Patterns of dynamic gene expression" by Levon Khachigian File:Levon FANTOM5 April2013(lk3).pdf

2. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on April 11th (uploaded after the call): File:130411 F5 Time-course telecon.zip

April 4th

Chair: Carsten Daub

AGENDA

1. "Regulators of immediate early genes" by Erik Arner File:Ier regulators arner 20130404.pdf

2. "Time-course progress update" by Carsten and Erik

2a. File:Progress update and plan 2013-04-04.pdf

2b. File:Figure X - Overview expression clustering.pdf

3. Other topics, if any

Analysis Call Tip:

If concerned about the noise, we recommend putting your line in "listen-only" mode during presentation sessions of the call.

To enable "listen-only" mode press 97.

To disable "listen-only" mode press 96.

Audio File The audio file from the call on April 4th (uploaded after the call): File:130404 F5 Telecon.zip

March 28th

Chair: Carsten Daub

AGENDA

1. Presentation by Tom Freeman "Correlation Network Analysis of Human Time-courses" File:Human datasets - Freeman 2013-03-28.pdf

2. Other topics, if any

Audio File The audio file from the call on March 28th (uploaded after the call): File:130328 F5 Time-course telecon.zip

March 21st

CANCELLED

March 14th

Chair: Carsten Daub

AGENDA

1. Presentation by Emmanuel Dimont and Win Hide, "Promoter Switching: a Renewed look at all timecourses": File:14march2013EmmanuelTC.pdf

2. Presentation by Marco Mina and Cesare Furlanello, "Early Response Patterns and Network Analysis": File:MarcoCesare.pdf File:Slide13updated.pdf

3. Other topics, if any

Audio File The audio file from the call on March 14th (uploaded after the call): File:130314 F5 Time-course telecon.zip

March 7th

Chair: Carsten Daub

AGENDA

1. Presentation by Pal Saetrom "De novo detection of immediate-early expression in the F5 series": File:Saetrom-7Mar2013.pdf

1b. Alternative approach by Robin Andersson to detect (immediate) early enhancers (and promoters): File:Early response enhancers 130307 Andersson.pdf

1c. Status on known IEGs (from literature) by Finn Drablos: File:Finn Drablos IER 07 03 2013.pdf

2. Update on main paper plan and related activities (Erik & Carsten) File:Updates 2013-03-07.pdf

3. Other topics, if any

Audio File The audio file from the call on March 7th (uploaded after the call): File:130307 F5 Time-course telecon.zip

February 28th

CANCELLED

February 21st

Chair: Carsten Daub

AGENDA

1. Updates about analysis progress and analysis plan File:TC call 2013-02-21.pptx

2. Other topics, if any

Audio File The audio file from the call on February 21st (uploaded after the call): File:130221 F5 Time-course telecon.zip

February 14th

Chair: Erik Arner

AGENDA

1. Presentation by Pal Saetrom (NTNU): Common expression patterns across the F5 time series? File:Saetrom-14Feb2013.pdf

2. Other topics, if any

Audio File The audio file from the call on February 14th (uploaded after the call): File:130214 F5 Time-course telecon.zip

February 7th

Chair: Carsten Daub

AGENDA

1. Short update by RIKEN OSC

• File:TC-call Carsten 2013-02-07.pptx
• Time-courses Main paper to-do table with time-line

2. Other topics, if any

Audio File The audio file from the call on February 7th (uploaded after the call): File:130207 F5 Time-course telecon.zip

January 31st

Chair: Carsten Daub

AGENDA

1. Time-courses main paper - figures and to do list

• File:TC-call Carsten 2013-01-31.pdf
• Time-courses Main paper material on webdav

2. Other topics, if any

Audio File The audio file from the call on January 31st (uploaded after the call): File:130131 F5 Time-course telecon.zip

January 24th

Chair: Carsten Daub

AGENDA

1. Presentation by Robin Andersson (Sandelin group): FANTOM5 time course enhancers, detection, differential expression and QC (UPDATE 021): File:F5 time course enhancers Andersson teleconf 130124.pptx, Data available from the Enhancers page.

2. Other topics, if any

Audio File The audio file from the call on January 24th (uploaded after the call): File:130124 F5 Time-course telecon.zip

January 8th

CANCELLED

Happy New Year!

No Analysis Call till January 8th

Happy holidays!

December 18th

Chair: Carsten Daub

AGENDA

1. Updates on the QC pipeline based on CAGE clusters for phase 2 File:Timecourse summary 20121218.pptx

2. Other topics, if any

Audio File The audio file from the call on December 18th (uploaded after the call): File:121218 F5 Time-course telecon.zip

December 11th

Cancelled

December 4th

Cancelled

October 30th

This week's teleconference is CANCELLED due to Time-courses meeting being held at RIKEN.

October 23rd

Chair: Carsten Daub

AGENDA

1. Presentation Emmanuel Dimont - "Promoter Switching in the F5 time courses: results from the H9 melanocytic induction time course" File:Promoter Switching - Emmanuel Dimont.ppt

2. Presentation Ivan Kulakovskly - "Preferred Pair Distance Distributions and Templates (PPDD/T) to detect composite elements of transcription factor binding sites" File:PPDDT CompEl analysis VIGG.pptx

3. Other topics, if any

Audio File The audio file from the call on October 16th (uploaded after the call): File:121023 F5 Time-course telecon.zip

October 16th

Chair: Carsten Daub

AGENDA

1. Presentation by Beatrice Bodega (Valerio Orlando group) with title "Skeletal muscle cells and analysis". File:Valerio Skeletal muscle.pdf

2. Workshops for the first two days of the FANTOM Time-course meeting. (Carsten Daub) File:Workshops for the FANTOM5 Time-course Meeting.pdf

3. Other topics, if any

Audio File The audio file from the call on October 16th (uploaded after the call): File:121016 F5 Time-course telecon.zip

October 9th

Chair: Carsten Daub

AGENDA

1. Presentation "Inferring TF interactions from timecourse data" by Peter Pemberton-Ross File:Presentation Peter PR.pdf

2. Other topics, if any

Audio File The audio file from the call on October 16th (uploaded after the call): File:121009 F5 Time-courses telecon.zip

October 2nd

Chair: Carsten Daub

AGENDA

1. Presentation "Mapping early steps in brain development in Down Syndrome using iPSC differentiation models" by Christine Wells File:Mapping early steps in brain development 2.pdf

2. Comments about the "hands-on" days of the Time-courses FANTOM5 meeting by Carsten Daub Time-courses meeting October 2012#Hands-on_analysis_sessions

3. Other topics, if any

Audio File The audio file from the call on October 2nd (uploaded after the call): File:121002 F5 Time-course telecon.zip

September 25th

Chair: Carsten Daub

AGENDA

1. Presentation "Robust identification of expression level switching and measures of regulatory complexity in timecourse data" by Martin Taylor File:Topic1.pdf

2. Other topics, if any

Audio File The audio file from the call on September 25th (uploaded after the call): File:120925 F5 Time-course telecon.zip

September 18th

Chair: Carsten Daub

AGENDA

1. Brief intro about the J2E and K562 differentiation system by Louise Winteringham File:REGULATION OF ERYTHROID DIFFERENTIATION.pdf

2. Outline and discussion about the Erythropoiesis time-course satellite paper

2.1 Preliminary plans for analysis by Sandelin group File:File3.pdf

2.2 Presentation by Andreas Lennartsson File:Lennartsson.pdf

3. Other topics, if any

Audio File The audio file from the call on September 18th (uploaded after the call): File:120918 F5 Time-course telecon.zip

September 11th

Chair: Carsten Daub

AGENDA

1. Presentation by Thomas and Anthony File:TH AM 120911.pdf

2. Discussion about Time-course Main Paper validation experiments File:ValidationExperimentDiscussion Carsten 2012-09-11.pdf

3. Other topics, if any

Audio File The audio file from the call on September 11th (uploaded after the call): File:120911 F5 Time-course telecon.zip

September 4th

Chair: Carsten Daub

AGENDA

1. Setup and general goals for the time-courses (phase II) [Introduction by Carsten Daub (20 min)] File:Presentation Carsten 2012-09-04.pdf

2. Available resources for the time-courses [Presentation by Erik Arner (20 min)] File:Timecourse summary 20120904.pptx

3. Validation experiments - what type of validation experiments will have most impact? [Discussion, lead by Carsten (15 min)]

4. Other questions

Audio File The audio file from the call on September 4th (uploaded after the call): File:120904 F5 Time-course telecon.zip