User:Tlassmann: Difference between revisions
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(Created page with '== Purpose == Provide basic F3 style clustering. == Method == For each library, Helicos CAGE tag mappings with Delve quality of at least 10 were clustered into CTSS:s. Expre…') |
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== Purpose == |
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Provide basic F3 style clustering. |
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== Method == |
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For each library, Helicos CAGE tag mappings with Delve quality of at least 10 were clustered into CTSS:s. Expression was calculated as tags per million (TPM) and CTSS:s with at least 1 TPM expression were clustered using single linkage clustering (separate on each strand) of tags spaced at most 20 bp. |
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== Input == |
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Delve mapping files in bam format. |
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== Output == |
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Cluster file in BED format. |
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