User:Tlassmann/clustering: Difference between revisions
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(Created page with '== Purpose == Provide basic F3 style clustering. == Method == For each library, Helicos CAGE tag mappings with Delve quality of at least 10 were clustered into CTSS:s. Expre…') |
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Cluster file in BED format. |
Cluster file in BED format. |
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[[File:clusteringPipeline.png|frameless|caption]] |
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Revision as of 17:43, 14 January 2011
Purpose
Provide basic F3 style clustering.
Method
For each library, Helicos CAGE tag mappings with Delve quality of at least 10 were clustered into CTSS:s. Expression was calculated as tags per million (TPM) and CTSS:s with at least 1 TPM expression were clustered using single linkage clustering (separate on each strand) of tags spaced at most 20 bp.
Input
Delve mapping files in bam format.
Output
Cluster file in BED format.
