Data Analysis and Integration: Difference between revisions
From Wiki
Jump to navigationJump to search
No edit summary |
No edit summary |
||
| Line 20: | Line 20: | ||
* Text |
* Text |
||
= paper specific analysis = |
= Main paper specific analysis = |
||
* Tissue specificity / cell type specificity - ontology consious |
* Tissue specificity / cell type specificity - ontology consious |
||
* Annotation of transcript (ncRNA) |
* Annotation of transcript (ncRNA) |
||
Revision as of 13:52, 6 January 2011
Please edit this section to fit to the needs of Data Analysis and Integration.
General topics
Mapping and QC: Timo
- A selction of mapping tools has been added to the pipelines. I wrote a simple shell script to annotate / QC libraries.
Clustering / peak calling: Erik
- Text
Expression normalization and differential expression (based on genes, peaks, or whatever) : Kawaji
- computational performance of edgeR 1.6 (by Marina)
Annotation of promoter / 'gene' expression : Nicolas
- Text
Motif activity : Michiel
- Text
Conservation / orthologous mapping (variome, basins) : Max
- Text
Main paper specific analysis
- Tissue specificity / cell type specificity - ontology consious
- Annotation of transcript (ncRNA)
