Data Analysis and Integration: Difference between revisions
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Please edit this section to fit to the needs of Data Analysis and Integration. |
Please edit this section to fit to the needs of Data Analysis and Integration. |
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= General topics = |
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== Mapping and QC: Timo == |
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* A selction of mapping tools has been added to the pipelines. I wrote a simple shell script to annotate / QC libraries. |
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== Clustering / peak calling: Erik == |
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* Text |
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== Expression normalization and differential expression (based on genes, peaks, or whatever) : Kawaji == |
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* computational performance of edgeR 1.6 (by Marina) |
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== Annotation of promoter / 'gene' expression : Nicolas == |
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* Text |
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== Motif activity : Michiel == |
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*Text |
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== Conservation / orthologous mapping (variome, basins) : Max == |
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* Text |
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= paper specific analysis = |
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* Tissue specificity / cell type specificity - ontology consious |
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* Annotation of transcript (ncRNA) |
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Revision as of 13:51, 6 January 2011
Please edit this section to fit to the needs of Data Analysis and Integration.
General topics
Mapping and QC: Timo
- A selction of mapping tools has been added to the pipelines. I wrote a simple shell script to annotate / QC libraries.
Clustering / peak calling: Erik
- Text
Expression normalization and differential expression (based on genes, peaks, or whatever) : Kawaji
- computational performance of edgeR 1.6 (by Marina)
Annotation of promoter / 'gene' expression : Nicolas
- Text
Motif activity : Michiel
- Text
Conservation / orthologous mapping (variome, basins) : Max
- Text
paper specific analysis
- Tissue specificity / cell type specificity - ontology consious
- Annotation of transcript (ncRNA)
