Ciliated epithelium timecourse: Difference between revisions
From Wiki
Jump to navigationJump to search
No edit summary |
No edit summary |
||
| Line 15: | Line 15: | ||
*Freeze1 cluster based RLE normalized expression |
*Freeze1 cluster based RLE normalized expression |
||
** https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/mouse_Tracheal_epithelial_cells.hCAGE.mm9.RLE.tpm.cluster.txt.gz |
** https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/mouse_Tracheal_epithelial_cells.hCAGE.mm9.RLE.tpm.cluster.txt.gz |
||
** Cluster to gene association https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/ |
** Cluster to gene association https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/mouse_robust_cluster2entrez.txt |
||
'''Motifs''' |
'''Motifs''' |
||
Revision as of 16:53, 30 October 2012
Mouse primary lunge epithelial cell differentiation to ciliated epithelial cells
Mitsuru Morimoto ...
Zenbu configurations and status
Gene expression profiles
- Known gene expression for the Ciliated epithelium differentiation series
- Promoterome v1.0 expression for the Ciliated epithelium differentiation series
- Top dynamic TFs in the Ciliated epithelium differentiation series
- Freeze1 cluster based RLE normalized expression
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/mouse_Tracheal_epithelial_cells.hCAGE.mm9.RLE.tpm.cluster.txt.gz
- Cluster to gene association https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/mouse_robust_cluster2entrez.txt
Motifs
- Top dynamic motifs in the Ciliated epithelium differentiation series
MARA based network results
- Most recent version (July 23 2012):
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_Tracheal_epithelial_cells/mouse_Tracheal_epithelial_cells.mara
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_Tracheal_epithelial_cells/mouse_Tracheal_epithelial_cells.net.tf_gene.csv
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_Tracheal_epithelial_cells/mouse_Tracheal_epithelial_cells.net.tf_prom.csv
- Previous version(s):
Related samples
- ..
References
- ..
Quality control
Most recent version (July 23 2012):
Previous version(s):
File:Tracheal epithelial cells.zip
- ..
