Ciliated epithelium timecourse: Difference between revisions
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'''MARA based network results''' |
'''MARA based network results''' |
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*Most recent version ( |
*Most recent version (July 23 2012): |
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**https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_Tracheal_epithelial_cells/mouse_Tracheal_epithelial_cells.mara |
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**https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_Tracheal_epithelial_cells/mouse_Tracheal_epithelial_cells.net.tf_gene.csv |
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**https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_Tracheal_epithelial_cells/mouse_Tracheal_epithelial_cells.net.tf_prom.csv |
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*Previous version(s): |
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**https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120409/mouse_Tracheal_epithelial_cells/mouse_Tracheal_epithelial_cells.mara |
**https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120409/mouse_Tracheal_epithelial_cells/mouse_Tracheal_epithelial_cells.mara |
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'''Quality control''' |
'''Quality control''' |
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Most recent version ( |
Most recent version (July 23 2012): |
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https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/ |
https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_Tracheal_epithelial_cells/ |
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Previous version(s): |
Previous version(s): |
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https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120409/mouse_Tracheal_epithelial_cells/ |
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[[File:Tracheal_epithelial_cells.zip]] |
[[File:Tracheal_epithelial_cells.zip]] |
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Revision as of 18:52, 23 July 2012
Mouse primary lunge epithelial cell differentiation to ciliated epithelial cells
Mitsuru Morimoto ...
Zenbu configurations and status
Gene expression profiles
- Known gene expression for the Ciliated epithelium differentiation series
- Promoterome v1.0 expression for the Ciliated epithelium differentiation series
- Top dynamic TFs in the Ciliated epithelium differentiation series
- Freeze1 cluster based RLE normalized expression
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/mouse_Tracheal_epithelial_cells.hCAGE.mm9.RLE.tpm.cluster.txt.gz
- Cluster to gene association https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/mouse_cluster2entrez.txt
Motifs
- Top dynamic motifs in the Ciliated epithelium differentiation series
MARA based network results
- Most recent version (July 23 2012):
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_Tracheal_epithelial_cells/mouse_Tracheal_epithelial_cells.mara
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_Tracheal_epithelial_cells/mouse_Tracheal_epithelial_cells.net.tf_gene.csv
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_Tracheal_epithelial_cells/mouse_Tracheal_epithelial_cells.net.tf_prom.csv
- Previous version(s):
Related samples
- ..
References
- ..
Quality control
Most recent version (July 23 2012):
Previous version(s):
File:Tracheal epithelial cells.zip
- ..
