Analyst experimentalist pairing

Analysis that will be dome for all time-course

Please refer to Timecourses page.

List of experimentalists

• AA group
  • Time-course provided by the group: Calcification (this is just an example, put real reference here)
  • Interest of the group
  • Analysis aspects this group would like to be addressed

• UBC Dan Goldowitz, Thomas Ha, Peter Zhang
  • B6 Mouse Cerebellar development (12 time points, 3 replicates each)
  • Interest: Primary goal is the Identification of Transcriptional Network active during development.
  • However, we would like to see various computational analyses applied to the cerebellar development time course data.

We just have scratched the surface and need computational biologists help to delve deep into the data. Comparison with other time series such as Testis development, thymus development and inner hair cell development as well. There are many biologically relevant samples that are not time course, but would be still interesting to compare.

• additional groups please put your names here

List of Bioinformatics groups

• AA group
  • Interest of the group
  • Analysis aspects this group is interested and/or experienced in

• Bristol (Gough, Rackham)
  • Cell reprogramming and trans-differentiation
  • "Mogrify" prediction of transcription factors for cell reprogramming. Also prediction and scoring of which trans-differentiations are feasible, i.e. the map of the landscape of (inducable) cellular differentiation.

• CBRC Martin Frith
  • Promoter motifs, general CAGE analysis
  • Interested in helping to analyze a specific dataset, with focused questions.