Visual cortex development: Difference between revisions

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* [https://fantom5-collaboration.gsc.riken.jp/zenbu/gLyphs/#config=1YUA8nMROp3sdHFoI4CLi Visual cortex]('''COMPLETED''' ...)
* [https://fantom5-collaboration.gsc.riken.jp/zenbu/gLyphs/#config=1YUA8nMROp3sdHFoI4CLi Visual cortex]('''COMPLETED''' ...)


'''Gene expression profiles'''
'''Expression profiles'''
*Known gene expression for the visual cortex development series (RefSeq based promoters)
*Gene and CAGE cluster expression for the visual cortex development series
** [https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20111008_expression_table_by_timecourse/mouse.visual-cortex.hCAGE.mm9.tpm.refgene.osc.txt.gz TPM]
**https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/time_course_main_paper_freeze_feb2013/qc_release_130226/mouse_visual_cortex/expression_tables/
** [https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20111008_expression_table_by_timecourse/mouse.visual-cortex.hCAGE.mm9.count.refgene.osc.txt.gz tagcount]
*Promoterome v1.0 expression for the visual cortex development series
*Top dynamic TFs in visual cortex development series
*Freeze1 cluster based RLE normalized expression
⚫
** https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/mouse_visual_cortex.hCAGE.mm9.RLE.tpm.cluster.txt.gz
** Cluster to gene association https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/mouse_robut_cluster2entrez.txt

'''Motifs'''
*Top dynamic motifs in visual cortex development series


'''MARA based network results'''
'''MARA based network results'''
⚫
*https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/time_course_main_paper_freeze_feb2013/qc_release_130226/mouse_visual_cortex/mara/
*Most recent version (July 23 2012):
⚫
**https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_visual_cortex/mouse_visual_cortex.mara
**https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_visual_cortex/mouse_visual_cortex.net.tf_gene.csv
**https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_visual_cortex/mouse_visual_cortex.net.tf_prom.csv

*Previous version(s):
**https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120409/mouse_visual_cortex/mouse_visual_cortex.mara


'''Related samples'''
'''Related samples'''
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'''Quality control'''
'''Quality control'''


⚫
https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/time_course_main_paper_freeze_feb2013/qc_release_130226/mouse_visual_cortex/mara/
*Most recent version (July 23 2012):
**https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_visual_cortex/

*Previous version(s):
**https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120409/mouse_visual_cortex/


==[[ISMARA]] results==
==[[ISMARA]] results==

Revision as of 14:54, 27 February 2013

Visual cortex development

...

Zenbu configurations and status

Expression profiles

MARA based network results

Related samples

  • ...

References

  • ...

Quality control

https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/time_course_main_paper_freeze_feb2013/qc_release_130226/mouse_visual_cortex/mara/

ISMARA results

All samples: http://ismara.unibas.ch/timecourses/visualcortex/ismara_report/

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