Retinal pigment mesenchyme transition: Difference between revisions
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*Most recent version (July 23 2012): |
*Most recent version (July 23 2012): |
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**https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/human_ARPE-19/ |
**https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/human_ARPE-19/ |
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==[[ISMARA]] analysis results== |
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All samples: |
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http://ismara.unibas.ch/timecourses/retinal_pigment_EMT/ismara_report/index.html |
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Replicate averaged: |
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http://ismara.unibas.ch/timecourses/ARPE19-avgd/averaged_report/index.html |
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For more information, see [[ISMARA]]. |
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Revision as of 23:33, 28 November 2012
...
Zenbu configurations and status
Gene expression profiles
- Known gene expression for the retinal epithelium series
- TPM
- tagcount
- Promoterome v1.0 expression for the ARPE-19 series
- Top dynamic TFs in the ARPE-19 series
- Freeze1 cluster based RLE normalized expression
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/human_ARPE-19.hCAGE.hg19.RLE.tpm.cluster.txt.gz
- Cluster to gene association https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/human_robust_cluster2entrez.txt
Motifs
- Top dynamic motifs in the ARPE-19 series
MARA based network results
- Most recent version (July 23 2012):
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/human_ARPE-19/human_ARPE-19.mara
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/human_ARPE-19/human_ARPE-19.net.tf_gene.csv
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/human_ARPE-19/human_ARPE-19.net.tf_prom.csv
Related samples
- ...
References
- ...
Quality control
- Most recent version (July 23 2012):
ISMARA analysis results
All samples: http://ismara.unibas.ch/timecourses/retinal_pigment_EMT/ismara_report/index.html
Replicate averaged: http://ismara.unibas.ch/timecourses/ARPE19-avgd/averaged_report/index.html
For more information, see ISMARA.
