ZENBU Cluster with expression

Saos timecourse example quick overview

https://fantom5-collaboration.gsc.riken.jp/zenbu/gLyphs/#config=ndJNXLSZEdNkcx4tzUkdY;loc=hg19::chr19:36600502..36617366

Display your favorite timecourse expression profile onto Phase2 DPI cluster

Taking the Saos timecourse as an example

1. select the CTSS data to be pooled
   1. • from DEX (when creating a novel view)
      • from gLyph (when adding the track to an preexisting view)
        • search for the experiment to be pooled
          
        • duplicate an existing track whose primary data stream is already the desired experiment pool
2. Reconfigure the track
   
   1. In the stream processing section of the reconfigure panel, select predefined script
   2. Search for the processing of you choice
      keywords : "Phase2", "DPI", "cluster", "collated", "permissive", "robust"
      be mindful of the genome the script is tailored to.
      
   3. (recommended best practice) do not forget to modify the track name and description
   4. select the visualiztion of choice (ex. "arrow") and set the color to mirror summed expression level
      
   5. accept the reconfiguration
      

Finding Phase 2 DPI clusters in DEX or gLyph

keywords : "Phase2" "DPI" "cluster"

https://fantom5-collaboration.gsc.riken.jp/zenbu/dex/#section=Annotation;search=Phase2%20DPI%20cluster

DEX

gLyph

Finding the proper processing script

keywords : "Phase2" "DPI" "cluster" "collated"

Overview of available canned processing scripts : https://fantom5-collaboration.gsc.riken.jp/zenbu/dex/#section=Scripts;search=Phase2%20DPI%20collated

Selecting the processing script from gLyph