ZENBU Cluster with expression: Difference between revisions
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##*from DEX (when creating a novel view) |
##*from DEX (when creating a novel view) |
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##*from gLyph (when adding the track to an preexisting view) |
##*from gLyph (when adding the track to an preexisting view) |
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##** search for the experiment to be pooled |
##** search for the experiment to be pooled<br>[[Image:Z_Phase2_Track_reconfig.1.png|400px]] |
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##** duplicate an existing track whose primary data stream is already the desired experiment pool |
##** duplicate an existing track whose primary data stream is already the desired experiment pool |
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# Reconfigure the track |
# Reconfigure the track |
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## In the stream processing section of the reconfigure panel, select '''predefined script'''<br>[[Image:Z_Phase2_Track_reconfig.2.png|400px]] |
## In the stream processing section of the reconfigure panel, select '''predefined script'''<br>[[Image:Z_Phase2_Track_reconfig.2.png|400px]] |
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## Search for the processing of you choice<br> keywords : "Phase2", "DPI", "cluster", "collated", "permissive", "robust"<br> be mindful of the genome the script is tailored to.<br>[[Image:Z_Phase2_Track_reconfig.3.png|400px]] |
## Search for the processing of you choice<br> keywords : "Phase2", "DPI", "cluster", "collated", "permissive", "robust"<br> be mindful of the genome the script is tailored to.<br>[[Image:Z_Phase2_Track_reconfig.3.png|400px]] |
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## select the visualiztion of choice (ex. "arrow") and set the color to mirror summed expression level <br>[[Image:Z_Phase2_Track_reconfig.4.png|400px]] |
## select the visualiztion of choice (ex. "arrow") and set the color to mirror summed expression level <br>[[Image:Z_Phase2_Track_reconfig.4.png|400px]] |
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## accept the reconfiguration<br>[[Image:Z_Phase2_Track_reconfig.5.png|400px]] |
## accept the reconfiguration<br>[[Image:Z_Phase2_Track_reconfig.5.png|400px]] |
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== Finding Phase 2 DPI clusters in DEX or gLyph == |
== Finding Phase 2 DPI clusters in DEX or gLyph == |
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Revision as of 18:09, 31 October 2012
Saos timecourse example quick overview
Display your favorite timecourse expression profile onto Phase2 DPI cluster
Taking the Saos timecourse as an example
- select the CTSS data to be pooled
- from DEX (when creating a novel view)
- from gLyph (when adding the track to an preexisting view)
- search for the experiment to be pooled
- duplicate an existing track whose primary data stream is already the desired experiment pool
- search for the experiment to be pooled
- Reconfigure the track
- In the stream processing section of the reconfigure panel, select predefined script
- Search for the processing of you choice
keywords : "Phase2", "DPI", "cluster", "collated", "permissive", "robust"
be mindful of the genome the script is tailored to.
- (recommended best practice) do not forget to modify the track name and description
- select the visualiztion of choice (ex. "arrow") and set the color to mirror summed expression level
- accept the reconfiguration
- In the stream processing section of the reconfigure panel, select predefined script
Finding Phase 2 DPI clusters in DEX or gLyph
keywords : "Phase2" "DPI" "cluster"
DEX
gLyph
Finding the proper processing script
keywords : "Phase2" "DPI" "cluster" "collated"
Overview of available canned processing scripts : https://fantom5-collaboration.gsc.riken.jp/zenbu/dex/#section=Scripts;search=Phase2%20DPI%20collated
Selecting the processing script from gLyph
