HSC development

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Zenbu configurations and status

• HSC development

Gene expression profiles

• Known gene expression for the HSC development series
• TPM
• tagcount
• Promoterome v1.0 expression for the HSC development series
• Top dynamic TFs in the HSC development series
• Freeze1 cluster based RLE normalized expression
  • https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/mouse_hematopoietic_stem_cell.hCAGE.mm9.RLE.tpm.cluster.txt.gz
  • Cluster to gene association https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/mouse_robust_cluster2entrez.txt

Motifs

• Top dynamic motifs in the HSC development series

MARA based network results

• Most recent version (July 3 2012):
  • https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_hematopoietic_stem_cell/mouse_hematopoietic_stem_cell.mara
  • https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_hematopoietic_stem_cell/mouse_hematopoietic_stem_cell.net.tf_gene.csv
  • https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_hematopoietic_stem_cell/mouse_hematopoietic_stem_cell.net.tf_prom.csv

Related samples

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References

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Quality control

• Most recent version (July 23 2012):
  • https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_hematopoietic_stem_cell/