HSC development: Difference between revisions
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(Created page with '... '''Zenbu configurations and status''' * [https://fantom5-collaboration.gsc.riken.jp/zenbu/gLyphs/#config=4_ztEFbyNVZiORLkgnoE-D HSC development] '''Gene expression profil…') |
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'''Gene expression profiles''' |
'''Gene expression profiles''' |
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*Known gene expression for the |
*Known gene expression for the HSC development series |
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* [https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20111008_expression_table_by_timecourse/mouse_hematopoietic_stem_cell.hCAGE.mm9.tpm.refgene.osc.txt.gz TPM] |
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* [https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20111008_expression_table_by_timecourse/mouse_hematopoietic_stem_cell.hCAGE.mm9.count.refgene.osc.txt.gz tagcount] |
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*Freeze1 cluster based RLE normalized expression |
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** https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/mouse_hematopoietic_stem_cell.hCAGE.mm9.RLE.tpm.cluster.txt.gz |
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** Cluster to gene association https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/mouse_robust_cluster2entrez.txt |
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'''Motifs''' |
'''Motifs''' |
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*Top dynamic motifs in the |
*Top dynamic motifs in the HSC development series |
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'''MARA based network results''' |
'''MARA based network results''' |
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*Most recent version (July 3 2012): |
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*Chick development network based on top 30 dynamic motifs |
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**https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_hematopoietic_stem_cell/mouse_hematopoietic_stem_cell.mara |
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**https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_hematopoietic_stem_cell/mouse_hematopoietic_stem_cell.net.tf_gene.csv |
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**https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_hematopoietic_stem_cell/mouse_hematopoietic_stem_cell.net.tf_prom.csv |
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'''Related samples''' |
'''Related samples''' |
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'''Quality control''' |
'''Quality control''' |
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*Most recent version (July 23 2012): |
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*... |
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**https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_hematopoietic_stem_cell/ |
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Latest revision as of 17:00, 30 October 2012
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Zenbu configurations and status
Gene expression profiles
- Known gene expression for the HSC development series
- TPM
- tagcount
- Promoterome v1.0 expression for the HSC development series
- Top dynamic TFs in the HSC development series
- Freeze1 cluster based RLE normalized expression
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/mouse_hematopoietic_stem_cell.hCAGE.mm9.RLE.tpm.cluster.txt.gz
- Cluster to gene association https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/mouse_robust_cluster2entrez.txt
Motifs
- Top dynamic motifs in the HSC development series
MARA based network results
- Most recent version (July 3 2012):
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_hematopoietic_stem_cell/mouse_hematopoietic_stem_cell.mara
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_hematopoietic_stem_cell/mouse_hematopoietic_stem_cell.net.tf_gene.csv
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/mouse_hematopoietic_stem_cell/mouse_hematopoietic_stem_cell.net.tf_prom.csv
Related samples
- ...
References
- ...
Quality control
- Most recent version (July 23 2012):
