Retinal pigment mesenchyme transition: Difference between revisions
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'''Zenbu configurations and status''' |
'''Zenbu configurations and status''' |
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* [https://fantom5-collaboration.gsc.riken.jp/zenbu/gLyphs/#config=fU8yaSebOB0jnEdRRGviqD ARPE-19] |
* [https://fantom5-collaboration.gsc.riken.jp/zenbu/gLyphs/#config=fU8yaSebOB0jnEdRRGviqD ARPE-19] |
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* [https://fantom5-collaboration.gsc.riken.jp/zenbu/gLyphs/#config=egQcRvVcGltnph4I4lELw;loc=hg19::chr19:36376423..36402712 ARPE-19 timecourse - update Oct 26th] |
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'''Gene expression profiles''' |
'''Gene expression profiles''' |
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Revision as of 08:44, 29 October 2012
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Zenbu configurations and status
Gene expression profiles
- Known gene expression for the retinal epithelium series
- TPM
- tagcount
- Promoterome v1.0 expression for the ARPE-19 series
- Top dynamic TFs in the ARPE-19 series
- Freeze1 cluster based RLE normalized expression
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/human_ARPE-19.hCAGE.hg19.RLE.tpm.cluster.txt.gz
- Cluster to gene association https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/human_cluster2entrez.txt
Motifs
- Top dynamic motifs in the ARPE-19 series
MARA based network results
- Most recent version (July 23 2012):
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/human_ARPE-19/human_ARPE-19.mara
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/human_ARPE-19/human_ARPE-19.net.tf_gene.csv
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/arner/timecourse/release_120723/human_ARPE-19/human_ARPE-19.net.tf_prom.csv
Related samples
- ...
References
- ...
Quality control
- Most recent version (July 23 2012):
