User:Nbertin

Nicolas Bertin <nbertin@gsc.riken.jp>

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Role in F5

• Data Analysis and Integration
  
  • Transcript model derived annotation protocol
    
  • CAGEscan driven annotation protocol
    
  • Promoter / 'gene' expression
    
  • CAGE_Cluster_update Cluster_annotations
• Specific biological questions / dataset
  • NH
  • ...
• Paper
  • Long noncoding RNA main paper
• Nbertin/Long noncoding RNA main paper

WEBDAV

https://fantom5-collaboration.gsc.riken.jp/webdav/home/nbertin/

As of June 2012
	CAGE-Tag-Cluster-Annotation-Data.ClosestTSS.20120112_set.tar.gz	24-Jan-2012 19:04	204M
	CAGE-Tag-Cluster-Annotation-Data.ClosestTSS/	21-Dec-2011 22:23	 -
	CAGE-Tag-Cluster-Annotation_Apr11/	27-Apr-2011 20:07	 -
	CAGE-Tag-Cluster-Annotation_Aug11/	08-Aug-2011 17:12	 -
	CAGE-Tag-Cluster-Annotation_CAGEscanOrphanRescue_Dec11/	21-Dec-2011 22:08	 -
	CAGE-Tag-Cluster-Annotation_Dec11/	21-Dec-2011 22:16	 -
	CAGE-Tag-Cluster-Annotation_EncodeRegTfbsClustered/	24-Apr-2012 16:57	 -
	CAGE-Tag-Cluster-Annotation_GeneOntology_Dec11/	21-Dec-2011 22:03	 -
	CAGE-Tag-Cluster-Annotation_Jan12/	28-May-2012 17:13	 -
	CAGE-Tag-Cluster-Normalization-Comparison_Dec11/	12-Jan-2012 13:11	 -
	CAGE-Tag-Clustering-Evaluation/	08-Jul-2011 12:58	 -
	CAGEscan-Data-UPDATE_July11/	08-Jul-2011 17:11	 -
	CAGEscan-Mapping-Approach-Comparison/	31-Jan-2012 23:47	 -
	CAGEscan-TransSplicing/	13-Feb-2012 13:45	 -
	Catecholaminergic-Project/	10-Jan-2012 17:25	 -
	F5-PWM-to-TranscriptionFactorGene/	26-Jul-2011 15:53	 -
	F5-PWM-to-TranscriptionFactorGene_17May12/	17-May-2012 16:56	 -
	F5-WP4-mRNA_EST-ProperlyOriented/	18-Jan-2012 20:57	 -
	NHcell-Project/	25-May-2012 20:44	 -
	Rapamycin-Project/	04-Jul-2011 18:21	 -
	Sense-Antisense-Transcription/	16-May-2011 22:43	 -
	lncRNAome-Construction_Feb12/	16-Feb-2012 21:50	 -
	lncRNAome-Construction_Jan12/	20-Jan-2012 21:55	 -
	lncRNAome-Construction_Mar12/	21-Mar-2012 15:31	 -
	lncRNAome-RIKEN_flcDNA_Jan12/	17-Jan-2012 20:25	 -
	lncRNAome-RNAseq_CufflinkAssembly-hCAGE-Associations_05Mar12/	05-Mar-2012 14:05	 -
	lncRNAome-RNAseq_CufflinkAssembly-hCAGE-Associations_16Apr12/	23-Apr-2012 21:16	 -
	lncRNAome-RNAseq_CufflinkTrinityAssembly-comparison_27Apr12/	27-Apr-2012 10:59	 -
	lncRNAome-RNAseq_CufflinkTrinityAssembly-comparison_29May12/	29-May-2012 22:20	 -
        lncRNAome_Aug11/	11-Aug-2011 20:08	 -

Interests

<edit>

• ncRNA
  
• CAGEscan / CAGE integration
  
• ...