Retinal pigment mesenchyme transition: Difference between revisions
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*Promoterome v1.0 expression for the ARPE-19 series |
*Promoterome v1.0 expression for the ARPE-19 series |
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*Top dynamic TFs in the ARPE-19 series |
*Top dynamic TFs in the ARPE-19 series |
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*Freeze1 cluster based RLE normalized expression |
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** https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/human_ARPE-19.hCAGE.hg19.RLE.tpm.cluster.txt.gz |
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** Cluster to gene association https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/human_cluster2entrez.txt |
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'''Motifs''' |
'''Motifs''' |
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Revision as of 11:19, 13 June 2012
...
Zenbu configurations and status
Gene expression profiles
- Known gene expression for the retinal epithelium series
- TPM
- tagcount
- Promoterome v1.0 expression for the ARPE-19 series
- Top dynamic TFs in the ARPE-19 series
- Freeze1 cluster based RLE normalized expression
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/human_ARPE-19.hCAGE.hg19.RLE.tpm.cluster.txt.gz
- Cluster to gene association https://fantom5-collaboration.gsc.riken.jp/webdav/home/m.lizio/20120612_cluster_expression_table_by_timecourse/human_cluster2entrez.txt
Motifs
- Top dynamic motifs in the ARPE-19 series
MARA based network results
- ARPE-19 network based on top 30 dynamic motifs
Related samples
- ...
References
- ...
Quality control
- ...
