Archive notes

Archived Release Notes

• September 10 2010

The configuration files include the first bunch of Helicos production runs for tissues.

• September 30 2010

Updated configurations to include the recently mapped libraries (tissues, cell lines, snapshots). All configurations from this date onwards show raw mapping (indexDP) based expression, rather than level1 (CTSS) based expression.

• October 15 2010

Yet one more update for mouse tissues.

• November 01 2010

Delve-based mapping files are now available and are loaded into the system.

• November 05 2010

Update of configurations for human and mouse tracks, delve-based mapping.

• November 08 2010

Updated configuration for dog tracks, delve-based mapping

• November 12 2010

Updated configurations for dog, human, mouse tracks both delve based mapping and indexDP based mapping

• November 17 2010

Some libraries mapped with indexDP were mapped to hg19. Configurations were fixed, and different configurations for both human assembly are now made available

• November 29 2010

Drastic improvement in the configurations!!!Delve based data is updated with more libraries. All 5 species (human, rat, mouse, dog, chicken) are configured and tracks are sorted alphabetically.

• December 1 2010

Mouse delve configuration updated.

• December 3 2010

Mouse and human configurations updated.

• December 9 2010

The tracks based on indexDP mapping are no longer available, so configurations relative to them have also been removed to avoid confusion.

• December 14 2010

CTSS expression based on delve_align mapping is now available!!!

• January 6 2011

Configurations for human and mouse have been updated.

• January 12 2011

Configuration for human, mapping-based expression has been updated.

• January 14 2011

Delve mapping-based configuration will no longer be available from TODAY. Please update your bookmarks to point to the configurations of CTSS-based expression.

• January 27 2011

Configurations are updated for all organisms.

• February 1 2011

Now available ctss track with both tagcount and TPM expression

• February 8 2011

Configurations for all species are updated.

• February 21 2011

Configurations for human have been updated

• February 25 2011

Configurations (general view and pooled view) for human, mouse and rat are updated

• March 3 2011

Configurations for human, mouse and rat for category-based views, are updated.

• April 5 2011

Configurations for all organisms, single track and pooled views, are updated.

• April 8 2011

Human and mouse configurations, single track and pooled view, are updated.

• May 16 2011

All configurations have been updated to the latest version of CTSS expression samples.

• May 24 2011

Configurations update!

• June 1 2011

Configurations for human and mouse have been updated. A quality-control category for human samples has been added. Quality control mouse samples have been removed from the pooled- and single-track configurations.

• June 27 2011

Human and mouse configurations are updated.

• July 26 2011

We started preparing configurations for time course sets. Soon the comprehensive configuration for all time courses will be dismissed.We are not updating it from today.

• August 11 2011

Update to the time course configurations and general configuration update with addition of clusters.

• October 12 2011

Timecourse configurations are updated. Human and mouse configuration for single track and pooled versions are updated.

• November 17 2011

Configurations for human and mouse updated. New lncRNAome set used for annotation. Timecourse configurations for human updated.

• November 28 2011

Configurations for human have been updated to display the most current lncRNAome dataset.

• December 15 2011

Configurations for pooled human and mouse samples are updated. Timecourse configurations are updated.

• December 28 2011

Configurations for human and mouse samples are updated.

• January 25 2012

Mouse and human configurations have been updated with the new gene models and EST. Chicken embryo series configuration is updated.

• February 22 2012

Configurations for human have been updated. Basically, new shortRNA data is now displayed as a track, a few wrongly classified samples have been put into the correct configuration (i.e. from primary cell to cell line category) Configuration for macaque (basic annotation) is now available. Configuration for rat has got new EST

• March 2 2012

New configuration for human. Timecourses and tissue for human have been also updated.